conductivity-temperature-depth

Marine technician Lynn Butler gives a tutorial on the CTD rosette.

Marine technician Lynn Butler gives a tutorial on the CTD rosette.

One of the most important things we’re doing on this cruise is to take “CTD”casts. CTD stands for “conductivity-temperature-depth”, and instrument that measures what you’d guess it would: conductivity, temperature, and depth* of water as it is lowered over the side of the boat. In practice, conductivity stands for the quantity of salt in the water. Taken together, these tell us the density of water at each depth, which tells us a lot about where the water comes from and how it is moving.

The technical control station.

The technical control station, where the CTD data are displayed in real time.

In practice, the CTD rosette comes with lots of other instrumentation, which tell us, for instance, the amount of chlorophyll in the water (an indicator for phytoplankton), the flux of light from the surface, and the turbidity of the water. Best of all – for me, at least – it is festooned with “Niskin bottles” which collect water at set depths. Since the CTD returns data to the ship in real time, we often make decisions about where to collect water samples in real time. For instance, I often collect water from the depth at which chlorophyll is most abundant. To find this, we profile the water column while the CTD is descending, make some decisions, and collect the water on the way back up.

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Particle Portraiture

In addition to my duties as Co-Chief scientist, I am investigating the sizes, types, and spatial distributions of particles throughout the water column.  Particles are ubiquitous in the marine environment and play an important part in the ocean’s biogeochemical cycles.  Because these particles are very small and often delicate, looking at these particles in their undisturbed natural environment is an excellent way to study them.

To accomplish this, I am using an Underwater Vision Profiler 5 (UVP5).

The UVP5 mounted on the CTD rosette.

The UVP5 mounted on the CTD rosette.

The UVP5 cameral peers down at the particles from within the CTD rosette.

The UVP5 cameral peers down at the particles from within the CTD rosette.

Commercially available from its manufacturer Hydroptic, the UVP5 is a sophisticated underwater camera system complete with its own digital camera, lens, lighting system, onboard computer, and a suite of software tools that make it easy to process and analyze the images of particles that it captures.  The instrument’s size makes it well suited to fit right into the CTD Rosette, meaning that it can be easily integrated into our oceanographic cruise plan since it does not require dedicated deployment time of its own that would add to our time at sea, or take away from other sampling opportunities.

Marine Snow imaged by the UVP5

Marine Snow imaged by the UVP5

An elongated marine snow particle as imaged by the UVP5

An elongated marine snow particle as imaged by the UVP5

Simply flipping through the images obtained by the UVP5 gives my colleagues and me an intuitive and qualitative understanding of exactly what tiny things are in the water.  On a more quantitative basis, image analysis performed by the provided software tools enables us to count the particles, measure their size, shape, and other physical characteristics.  This data will then be used to construct particle size distributions (number of particles per unit volume for each size bin), and eventually test hypotheses about how these properties vary with respect to depth, location, and other physical, chemical, and biological features in the ocean.

This is my first time using the UVP5, and I am quite impressed.  I hope to purchase this instrument soon and use it as one of the core observational assets of my budding oceanographic laboratory at the University of Alaska Fairbanks.  Many thanks to Hydroptic for letting me demo this instrument on this cruise.

Now it is time to grab some precious sleep during our transit out to the offshore stations!

Andrew McDonnell

Co-Chief Scientist

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We have diatoms

chaetoceros_lowres

Some kind of diatom of the Chaetoceros species. There’s a prize for anyone who can identify it more specifically in the comments.

Tali Treibitz, a member of our scientific party from Scripps Institution of Oceanography and UC-San Diego, will spend the trip testing her experimental underwater microscope-camera for visualizing small-scale particles. This camera attaches to the CTD rosette (the rack we use to collect seawater samples

Some kind of coiled diatom. Why would a diatom form as a coil? Diatoms are weird.

Some kind of coiled diatom. Why would a diatom form as a coil? Diatoms are weird.

and basic data about ocean temperature, salinity, and some other variables; more on this later) and takes microscopic images of the water that passes it by. She can use it to count particles, get some sense of their composition, and even to identify some species of phytoplankton. Note the scale bar: features on the order of a micrometer, or about 40 millionths of an inch, are clearly visible.

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Preparations

A view had by none of us this morning.

A view had by none of us this morning.

Welcome to the cruise blog for the 2013 UNOLS Chief Scientist Training cruise. UNOLS – the University National Oceanographic Laboratory System – is the body that runs the United States academic research fleet. Each research cruise needs a Chief Scientist to organize the scientific party and ensure that scientific goals are met, and the purpose of this trip is to train 14 early-career scientists in how to be a good “Chief Sci”.

We’ll be at sea together for six-and-a-half days on the R/V Endeavor. We’ll sail from Narragansett, RI, Endeavor’s home port, west along the Long Island coast to offshore New York Harbor. Then we go straight out to sea the Hudson River Canyon, about 300 km offshore, stopping frequently to take samples along the way. Finally we’ll head most of the way back inshore towards New York Harbor, and then back along the Long Island coast to Harbor.

While we’re at sea, Gordy Stephenson and I (Drew Steen) will try to post some updates in order to let you know what we’re up to.

science crew

The science crew

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